Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Genes Targeted by hsa-mir-579 in BPH Prostate Dhanasekaran Cluster 1 Table contains all genes in the BPH Prostate Dhanasekaran cluster number 1. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-579 55266 TMEM19 transmembrane protein 19 [Source:HGNC Symbol;Acc:25605] zzz999 7029 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) [Source:HGNC Symbol;Acc:11751] zzz999 7570 ZNF22 zinc finger protein 22 (KOX 15) [Source:HGNC Symbol;Acc:13012] T 5979 RET ret proto-oncogene [Source:HGNC Symbol;Acc:9967] zzz999 23019 CNOT1 CCR4-NOT transcription complex, subunit 1 [Source:HGNC Symbol;Acc:7877] zzz999 79618 HMBOX1 homeobox containing 1 [Source:HGNC Symbol;Acc:26137] zzz999 342945 ZSCAN22 zinc finger and SCAN domain containing 22 [Source:HGNC Symbol;Acc:4929] T 3707 ITPKB inositol-trisphosphate 3-kinase B [Source:HGNC Symbol;Acc:6179] T 9173 IL1RL1 interleukin 1 receptor-like 1 [Source:HGNC Symbol;Acc:5998] T 23309 SIN3B SIN3 homolog B, transcription regulator (yeast) [Source:HGNC Symbol;Acc:19354] zzz999 23433 RHOQ ras homolog gene family, member Q [Source:HGNC Symbol;Acc:17736] P T 2770 GNAI1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 [Source:HGNC Symbol;Acc:4384] P T 115825 WDFY2 WD repeat and FYVE domain containing 2 [Source:HGNC Symbol;Acc:20482] T 9209 LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 [Source:HGNC Symbol;Acc:6703] zzz999 8766 RAB11A RAB11A, member RAS oncogene family [Source:HGNC Symbol;Acc:9760] T 1208 CLPS colipase, pancreatic [Source:HGNC Symbol;Acc:2085] zzz999 8013 NR4A3 nuclear receptor subfamily 4, group A, member 3 [Source:HGNC Symbol;Acc:7982] P T 256471 MFSD8 major facilitator superfamily domain containing 8 [Source:HGNC Symbol;Acc:28486] zzz999 81839 VANGL1 vang-like 1 (van gogh, Drosophila) [Source:HGNC Symbol;Acc:15512] T 80304 C2orf44 chromosome 2 open reading frame 44 [Source:HGNC Symbol;Acc:26157] zzz999 160897 GPR180 G protein-coupled receptor 180 [Source:HGNC Symbol;Acc:28899] T 55320 MIS18BP1 MIS18 binding protein 1 [Source:HGNC Symbol;Acc:20190] zzz999 85439 STON2 stonin 2 [Source:HGNC Symbol;Acc:30652] zzz999 162417 NAGS N-acetylglutamate synthase [Source:HGNC Symbol;Acc:17996] zzz999 10761 PLAC1 placenta-specific 1 [Source:HGNC Symbol;Acc:9044] zzz999 53353 LRP1B low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:6693] T 5031 P2RY6 pyrimidinergic receptor P2Y, G-protein coupled, 6 [Source:HGNC Symbol;Acc:8543] zzz999 4927 NUP88 nucleoporin 88kDa [Source:HGNC Symbol;Acc:8067] zzz999 23235 SIK2 salt-inducible kinase 2 [Source:HGNC Symbol;Acc:21680] T 1439 CSF2RB colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) [Source:HGNC Symbol;Acc:2436] zzz999 92737 DNER delta/notch-like EGF repeat containing [Source:HGNC Symbol;Acc:24456] zzz999 170392 OIT3 oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:29953] zzz999 2040 STOM stomatin [Source:HGNC Symbol;Acc:3383] T 56940 DUSP22 dual specificity phosphatase 22 [Source:HGNC Symbol;Acc:16077] zzz999 143187 VTI1A vesicle transport through interaction with t-SNAREs homolog 1A (yeast) [Source:HGNC Symbol;Acc:17792] zzz999 5557 PRIM1 primase, DNA, polypeptide 1 (49kDa) [Source:HGNC Symbol;Acc:9369] zzz999 1543 CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:2595] zzz999 83737 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) [Source:HGNC Symbol;Acc:13890] T 64215 DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 [Source:HGNC Symbol;Acc:20090] T 286133 SCARA5 scavenger receptor class A, member 5 (putative) [Source:HGNC Symbol;Acc:28701] T 9701 PPP6R2 protein phosphatase 6, regulatory subunit 2 [Source:HGNC Symbol;Acc:19253] zzz999 10479 SLC9A6 solute carrier family 9 (sodium/hydrogen exchanger), member 6 [Source:HGNC Symbol;Acc:11079] T 54097 FAM3B family with sequence similarity 3, member B [Source:HGNC Symbol;Acc:1253] T 57211 GPR126 G protein-coupled receptor 126 [Source:HGNC Symbol;Acc:13841] T 10588 MTHFS 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) [Source:HGNC Symbol;Acc:7437] zzz999 29881 NPC1L1 NPC1 (Niemann-Pick disease, type C1, gene)-like 1 [Source:HGNC Symbol;Acc:7898] zzz999 5924 RASGRF2 Ras protein-specific guanine nucleotide-releasing factor 2 [Source:HGNC Symbol;Acc:9876] zzz999 26959 HBP1 HMG-box transcription factor 1 [Source:HGNC Symbol;Acc:23200] T 3641 INSL4 insulin-like 4 (placenta) [Source:HGNC Symbol;Acc:6087] zzz999 672 BRCA1 breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100] T 1849 DUSP7 dual specificity phosphatase 7 [Source:HGNC Symbol;Acc:3073] zzz999 6444 SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) [Source:HGNC Symbol;Acc:10807] T 9802 DAZAP2 DAZ associated protein 2 [Source:HGNC Symbol;Acc:2684] T 91452 ACBD5 acyl-CoA binding domain containing 5 [Source:HGNC Symbol;Acc:23338] T 160518 DENND5B DENN/MADD domain containing 5B [Source:HGNC Symbol;Acc:28338] P T 23760 PITPNB phosphatidylinositol transfer protein, beta [Source:HGNC Symbol;Acc:9002] T 50515 CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 [Source:HGNC Symbol;Acc:17422] zzz999 23545 ATP6V0A2 ATPase, H+ transporting, lysosomal V0 subunit a2 [Source:HGNC Symbol;Acc:18481] T 819 CAMLG calcium modulating ligand [Source:HGNC Symbol;Acc:1471] T 2983 GUCY1B3 guanylate cyclase 1, soluble, beta 3 [Source:HGNC Symbol;Acc:4687] T 545 ATR ataxia telangiectasia and Rad3 related [Source:HGNC Symbol;Acc:882] zzz999 6120 RPE ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] T 22866 CNKSR2 connector enhancer of kinase suppressor of Ras 2 [Source:HGNC Symbol;Acc:19701] zzz999 10117 ENAM enamelin [Source:HGNC Symbol;Acc:3344] zzz999 5730 PTGDS prostaglandin D2 synthase 21kDa (brain) [Source:HGNC Symbol;Acc:9592] zzz999 57035 C1orf63 chromosome 1 open reading frame 63 [Source:HGNC Symbol;Acc:25234] T 9595 CYTIP cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:9506] zzz999 151516 ASPRV1 aspartic peptidase, retroviral-like 1 [Source:HGNC Symbol;Acc:26321] zzz999 10171 RCL1 RNA terminal phosphate cyclase-like 1 [Source:HGNC Symbol;Acc:17687] zzz999 925 CD8A CD8a molecule [Source:HGNC Symbol;Acc:1706] T 1491 CTH cystathionase (cystathionine gamma-lyase) [Source:HGNC Symbol;Acc:2501] zzz999 144193 AMDHD1 amidohydrolase domain containing 1 [Source:HGNC Symbol;Acc:28577] T 79896 THNSL1 threonine synthase-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:26160] zzz999 118426 LOH12CR1 loss of heterozygosity, 12, chromosomal region 1 [Source:HGNC Symbol;Acc:17950] zzz999 1280 COL2A1 collagen, type II, alpha 1 [Source:HGNC Symbol;Acc:2200] T 189 AGXT alanine-glyoxylate aminotransferase [Source:HGNC Symbol;Acc:341] T 8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs [Source:HGNC Symbol;Acc:11345] zzz999 6307 SC4MOL sterol-C4-methyl oxidase-like [Source:HGNC Symbol;Acc:10545] T 4076 CAPRIN1 cell cycle associated protein 1 [Source:HGNC Symbol;Acc:6743] T 6173 RPL36A ribosomal protein L36a [Source:HGNC Symbol;Acc:10359] zzz999 79645 EFCAB1 EF-hand calcium binding domain 1 [Source:HGNC Symbol;Acc:25678] T 51400 PPME1 protein phosphatase methylesterase 1 [Source:HGNC Symbol;Acc:30178] zzz999 3231 HOXD1 homeobox D1 [Source:HGNC Symbol;Acc:5132] T 284459 HKR1 HKR1, GLI-Kruppel zinc finger family member [Source:HGNC Symbol;Acc:4928] zzz999 6571 SLC18A2 solute carrier family 18 (vesicular monoamine), member 2 [Source:HGNC Symbol;Acc:10935] zzz999 22822 PHLDA1 pleckstrin homology-like domain, family A, member 1 [Source:HGNC Symbol;Acc:8933] T

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